Viral sequence detection and vOTU clustering

Local Knowledge Graph (21 entities)

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Knowledge graph centered on Viral sequence detection and vOTU clustering with 21 nodes and 36 connections. Top connected: snowpack persistence, Virus diversity and activity is driven by snowmelt, temporal dynamics, plant-pathogen interactions, community structure.

Description

Computational pipeline using VirSorter2 and CheckV for viral sequence identification, followed by clustering into viral operational taxonomic units and taxonomic/host prediction.

Typical Equipment

VirSorter2
CheckV
geNomad
iPHoP
Mummer

Output Measurements

viral contigs
vOTUs
taxonomic assignments
host predictions

Papers Using This Protocol (1)

article

Virus diversity and activity is driven by snowmelt and host dynamics in a high-altitude watershed soil ecosystem

2023Microbiomeusing