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Genetic bottleneck simulation and detection (Sciuridae)

Subcategory: population genetics modeling
Standard reference: Kuo and Janzen (2003)
Papers: 1 | Mentions: 1

Local Knowledge Graph (16 entities)

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Knowledge graph centered on Genetic bottleneck simulation and detection (Sciuridae) with 16 nodes and 35 connections. Top connected: mark-recapture (Sciuridae), heritability, microsatellite parentage assignment (Sciuridae), inbreeding depression, quasi-extinction thresholds.

Description

Computer simulation of population genetic changes during bottlenecks using BOTTLESIM software combined with multiple analytical approaches to detect bottleneck signatures.

Typical Equipment

  • BOTTLESIM software
  • BOTTLENECK software
  • FSTAT software
  • GENEPOP software
  • HP-RARE software

Output Measurements

  • M-ratios
  • heterozygote excess
  • allelic diversity changes
  • bottleneck detection probability

Papers Using This Protocol (1)

article

Bottlenecks and rescue effects in a fluctuating population of golden-mantled ground squirrels (<i>Spermophilus lateralis</i>)

2011Conservation Geneticsusing