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PoolSeq nucleotide diversity analysis (Pieridae)

Subcategory: population genetics
Papers: 1 | Mentions: 1

Local Knowledge Graph (18 entities)

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Knowledge graph centered on PoolSeq nucleotide diversity analysis (Pieridae) with 18 nodes and 33 connections. Top connected: The genome of the Margined White butterfly (Pieris, evolutionary trap, CRISPR-Cas9 gene editing (Pieridae), chromosomal inversion, genome polishing.

Description

Population genetic analysis using pooled sequencing data to estimate nucleotide diversity across chromosomes and validate sex chromosome identity through coverage analysis.

Typical Equipment

  • NextGenMap
  • Samtools v.1.0
  • PoPoolation (v.1.2.2)

Output Measurements

  • nucleotide diversity
  • coverage ratios
  • variable site counts

Papers Using This Protocol (1)

article

The genome of the Margined White butterfly (Pieris macdunnoughii): sex chromosome insights and the power of polishing with PoolSeq data

2021Genome Biology and Evolutionusing