CRISPR-Cas analysis (Archaea)

Local Knowledge Graph (17 entities)

Knowledge graph centered on CRISPR-Cas analysis (Archaea) with 17 nodes and 37 connections. Top connected: Borgs are giant genetic elements with potential to, metagenome-assembled genome, gene coalescence, anaerobic methane oxidation, 16S rRNA gene sequencing.

Description

Verification of host-pathogen relationships using CRISPR spacer targeting combined with phylogenetic analysis and taxonomic profiling to identify archaeal hosts of Borg elements.

Typical Equipment

• computational analysis software

Output Measurements

• host-Borg associations
• phylogenetic relationships
• taxonomic profiles

Papers Using This Protocol (2)