Manual curation of large extrachromosomal elements (Archaea)

Local Knowledge Graph (19 entities)

Knowledge graph centered on Manual curation of large extrachromosomal elements (Archaea) with 19 nodes and 43 connections. Top connected: Borgs are giant genetic elements with potential to, metagenome-assembled genome, gene coalescence, anaerobic methane oxidation, 16S rRNA gene sequencing.

Description

Manual identification and curation of large genome fragments using GC content, coverage patterns, and taxonomic profiles to assemble complete extrachromosomal genomes.

Typical Equipment

• IDBA-UD
• MEGAHIT
• computational tools for sequence analysis

Output Measurements

• complete genome sequences
• genome organization features

Papers Using This Protocol (2)