GATK variant calling (Pieridae)

Local Knowledge Graph (12 entities)

Knowledge graph centered on GATK variant calling (Pieridae) with 12 nodes and 22 connections. Top connected: local adaptation, heritability, evolutionary trap, population structure, CRISPR-Cas9 gene editing (Pieridae).

Description

Bioinformatics pipeline for processing raw sequencing reads through quality filtering, mapping, variant calling, and SNP filtering using GATK v4.0 and associated tools.

Typical Equipment

• fastp
• bwa mem
• GATK v4.0
• VCFtools

Output Measurements

• high-quality SNP dataset

Papers Using This Protocol (1)