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maximum likelihood phylogeny

Subcategory: phylogenetic
Standard reference: Minh et al., 2020
Papers: 2 | Mentions: 3

Local Knowledge Graph (28 entities)

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Knowledge graph centered on maximum likelihood phylogeny with 28 nodes and 59 connections. Top connected: frequency-dependent selection, metagenome-assembled genome, gene coalescence, phylogenetic signal, balancing selection.

Description

Construction of phylogenetic trees using concatenated ribosomal protein genes to determine evolutionary relationships. Uses IQ-TREE with maximum likelihood approach and bootstrap support.

Typical Equipment

  • IQ-TREE software

Output Measurements

  • phylogenetic trees
  • bootstrap support values

Papers Using This Protocol (2)

article

Metagenome-assembled genomes for oligotrophic nitrifiers From a mountainous gravelbed floodplain

2025Environmental Microbiologyusing
article

A genetic polymorphism evolving in parallel in two cell compartments and in two clades

2013BMC Evolutionary Biologyusing