ITS phylogenetic reconstruction (Orobanchaceae)

Local Knowledge Graph (12 entities)

Knowledge graph centered on ITS phylogenetic reconstruction (Orobanchaceae) with 12 nodes and 27 connections. Top connected: plant-pollinator mutualism, heterospecific pollen transfer, self-incompatibility, phylogenetic distance, ovule usurpation.

Description

Standard molecular phylogenetic approach using ITS sequences to reconstruct evolutionary relationships and calculate phylogenetic distances between plant species. Includes sequence alignment, tree inference, and time calibration.

Typical Equipment

• R software
• msa package
• seqinr package
• ape package

Output Measurements

• phylogenetic distance
• evolutionary relationships

Papers Using This Protocol (1)