Sage-Grouse Genome Assembly and Sex Chromosome Evolution
Investigates the genomic architecture and evolutionary history of sex chromosomes in Greater and Gunnison Sage-grouse through whole genome sequencing, SNP genotyping, and computational genome annotation.
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Dataset (15) →
Sage-Grouse 1x reference-guided genome
1x consensus Sage-Grouse genome from reference-guided assembly using the Chicken genome as reference. Assembly statistics report is included.
Sage-Grouse de novo assembly
De novo assembly of the Gunnison Sage-Grouse using CLC Genomics Workbench. Includes CLC assembly report.
Data from: Two low coverage bird genomes and a comparison of reference-guided versus de novo genome assemblies
As a greater number and diversity of high-quality vertebrate reference genomes become available, it is increasingly feasible to use these references t...
Sage-Grouse 2x reference-guided genome
2x consensus Sage-Grouse genome from reference-guided assembly using the Chicken genome as reference. Assembly statistics report is included.
Sage-Grouse to Chicken chromosome annotation
Chromsome annotation of the Sage-Grouse using the Chicken genome. Used 1x reference-guided assembly and blast, and assumed high synteny between specie...
Sage-Grouse 5x reference-guided genome
5x consensus Sage-Grouse genome from reference-guided assembly using the Chicken genome as reference. Assembly statistics report is included.
Sage-Grouse mitochondrial assembly and MITOS annotation
Reference-guided assembly of the Sage-Grouse mitochondrion using consensus Galliformes mitochondrial sequence as guide. Includes MITOS annotation.
Data from: Z chromosome divergence, polymorphism, and relative effective population size in a genus of lekking birds
Sex chromosomes contribute disproportionately to species boundaries as they diverge faster than autosomes and often have reduced diversity. Their hemi...
Data from: Genomic single-nucleotide polymorphisms confirm that Gunnison and Greater sage-grouse are genetically well differentiated and that the Bi-State population is distinct
Sage-grouse are iconic, declining inhabitants of sagebrush habitats in western North America, and their management depends on an understanding of gene...
Z.3pops.4.arlequin
This is a text file in Arlequin input format and represents Z chromosome data for three groups (2 C. urophasianus - one (GRSG) is the southern part of...
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Expected-heterozygosity-FST-between-species
Excel spreadsheet comparing expected heterozygosity and FST at SNP loci, along with actual base counts from reads. Comparison is between the Greater S...
HC.auto.3pops
This file is a text file in Arelquin input format. It contains autosome SNP genotypes for three groups. Two groups of C. urophasianus (one is GRSG whi...
Sample collection information and whole genome data for Greater and Gunnison Sage-grouse range generated in the Molecular Ecology Lab during 2015-2018
This dataset contains sample collection information for whole genome sequences of Gunnison and Greater Sage-grouse. These data were collected in order...
Sample collection information and SNP data for Gunnison Sage-grouse across the species range generated in the Molecular Ecology Lab during 2015-2018
This dataset contains sample collection information and SNP genotypes for populations of Gunnison Sage-grouse across the species' range. This data was...
Genetic variation within the North American Sage-grouse genus Centrocercus (class Aves)
Evaluation of genetic differentiation within the Sage-grouse genus Centrocercus. Three geographically distinct samples of North American Sage-grouse, ...