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Hidden Markov Models

Scope: molecular
Papers: 1 | Mentions: 1

Local Knowledge Graph (37 entities)

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Knowledge graph centered on Hidden Markov Models with 37 nodes and 121 connections. Top connected: leaf water content, carbon cycling, biogeochemical reactions, nitrogen retention, elevation gradient.

Definition

Statistical models used to identify and characterize gene functions from metagenomic sequences

Related Terms (1)

HMM

Publications (1)

article

Microbial communities across a hillslope-riparian transect shaped by proximity to the stream, groundwater table, and weathered bedrock

2019Ecology and Evolutioncentral

Related Concepts (10)

metagenome-assembled genome

measurement4 shared papers

sulfate reduction

process2 shared papers

hillslope-riparian gradient

process2 shared papers

carbon cycling

process2 shared papers

proximity to stream

measurement2 shared papers

biogeochemical reactions

process2 shared papers

Heavy-metal contamination

phenomenon2 shared papers

anaerobic methane oxidation

process1 shared paper

pyrite oxidation

process1 shared paper

mountain hydrology

framework1 shared paper

Frequently Associated Species

Nitrososphaera sp.

1 paper

Desulfobacca acetoxidans

Syntrophaceae1 paper

Geobacter spp.

1 paper

Desulfuromonas sp.

1 paper

Thaumarchaeota

1 paper

Bathyarchaeota

1 paper

Euryarchaeota

1 paper

Alphaproteobacteria

1 paper

Gammaproteobacteria

1 paper

Shewanella oneidensis

1 paper